How to cite us…

Piccinini*, F., Balassa*, T., Szkalisity, A., Molnar, C., Paavolainen, L., Kujala, K., Buzas, K., Sarazova, M., Pietiainen, V., Kutay, U., Smith, K., Horvath, P. (2017)
Advanced Cell Classifier: user-friendly machine-learning-based software for discovering phenotypes in high-content imaging data.
Cell Systems. 2017 June.

See the full list of papers containing the keyword “Advanced Cell Classifier” in Google Scholar
Publications utilizing ACC…

Chan, K. T., Paavolainen, L., Hannan, K. M., George, A. J., Hannan, R. D., Simpson, K. J., … , Pearson, R. B. (2016).
Combining high-content imaging and phenotypic classification analysis of senescence-associated beta-galactosidase staining to identify regulators of oncogene-induced senescence.
ASSAY and Drug Development Technologies

Dao, D., Fraser, A. N., Hung, J., Ljosa, V., Singh, S., Carpenter, A. E. (2016)
CellProfiler Analyst: interactive data exploration, analysis and classification of large biological image sets.
Bioinformatics

Gschweitl, M., Ulbricht, A., Barnes, C. A., Enchev, R. I., Stoffel-Studer, I., Meyer-Schaller, N., Huotari, J.., Yamauchi, Y., Greber U.F., Helenius, A., Peter, M. (2016)
A SPOPL/Cullin-3 ubiquitin ligase complex regulates endocytic trafficking by targeting EPS15 at endosomes.
Elife

Persson, M., Hornberg, J. J. (2016)
Advances in predictive toxicology for discovery safety through high content screening.
Chemical research in toxicology

Saeed, K., Rahkama, V., Eldfors, S., Bychkov, D., Mpindi, J. P., Yadav, B., … , Peehl, D. M. (2016).
Comprehensive drug testing of patient-derived conditionally reprogrammed cells from castration-resistant prostate cancer.
European Urology

Badertscher, L., Wild, T., Montellese, C., Alexander, L. T., Bammert, L., Sarazova, M., Stebler, M., Csucs, G., Mayer, T. U., Zamboni, N., Zemp, I., Horvath, P., Kutay, U. (2015)
Genome-wide RNAi screening identifies protein modules required for 40S subunit synthesis in human cells.
Cell Reports

Fischer, U., Forster, M., Rinaldi, A., Risch, T., Sungalee, S., Warnatz, H. J., … , Sultan, M. (2015).
Genomics and drug profiling of fatal TCF3-HLF-positive acute lymphoblastic leukemia identifies recurrent mutation patterns and therapeutic options.
Nature Genetics

Kalapis, D., Bezerra, AR., Farkas, Z., Horvath, P., Bódi, Z., Daraba, A., Szamecz, B., Gut, I., Bayes, M., Santos, M. A., Pál, C. (2015)
Evolution of robustness to protein mistranslation by accelerated protein turnover.
PLoS Biology

Ungricht, R., Klann, M., Horvath, P., Kutay, U. (2015)
Diffusion and retention are major determinants of protein targeting to the inner nuclear membrane.
The Journal of Cell Biology

Balistreri, G., Horvath, P., Schweingruber, C., Zünd, D., McInerney, G., Merits, A., Mühlemann, O., Azzalin, C., Helenius, A. (2014)
The host nonsense-mediated mRNA decay pathway restricts Mammalian RNA virus replication.
Cell Host and Microbe

Banerjee, I., Miyake, Y., Nobs, S. P., Schneider, C., Horvath, P., Kopf, M., Matthias, P., Helenius, A., Yamauchi, Y. (2014)
Influenza A virus uses the aggresome processing machinery for host cell entry.
Science

Boutter, J., Huang, Y., Marovca, B., Vonderheit, A., Grotzer, M. A., Eckert, C., Cario, G., Wollscheid, B., Horvath, P., Bornhauser, B. C., Bourquin, J. P. (2014)
Image-based RNA interference screening reveals an individual dependence of acute lymphoblastic leukemia on stromal cysteine support.
Oncotarget

Meier, R., Franceschini, A., Horvath, P., Tetard, M., Mancini, R., Mering, C. V, Helenius, A. (2014)
Genome-wide siRNA screens reveal VAMP3 as a novel host factor required for Uukuniemi virus late penetration.
Journal of Virology

Singh, S., Carpenter, A. E., Genovesio A (2014)
Increasing the content of high-content screening: An overview.
Journal of Biomolecular Screening

Smith, K., Horvath, P. (2014)
Active learning strategies for phenotypic profiling of high-content screens.
Journal of Biomolecular Screening

Antony, P. M. A., Trefois, C., Stojanovic, A., Baumuratov, A. S., Kozak, K. (2013).
Light microscopy applications in systems biology: opportunities and challenges.
Cell Communication and Signaling

Banerjee, I., Yamautchi, Y., Helenius, A., Horvath, P. (2013)
High-content analysis of sequential events during the early phase of influenza A virus infection.
PLoS One

Huotari, J., Meyer-Schaller, N., Katheder, N., Horvath, P., Helenius, A., Peter, M. (2012)
Novel role of Cul3 in late endosome maturation
PNAS USA

Misselwitz, B., Barrett, N., Kreibich, S., Vonaesch, P., Andritschke, D., Rout, S., Weidner, K., Sormaz, M., Songhet, P., Horvath, P., Chabria, M., Vogel, V., Spori, D.M., Jenny, P., Chabria, M. (2012).
Near surface swimming of Salmonella Typhimurium explains target-site selection and cooperative invasion.
PLoS Pathogens

Palazzolo, G., Horvath, P., Zenobi-Wong, M. (2012)
The flavonoid isoquercitrin promotes neurite elongation by reducing RhoA activity.
PLoS One

Zwolinski, L., Kozak, M., Kozak, K. (2012).
1Click1View: Interactive visualization methodology for RNAi cell-based microscopic screening.
BioMed Research International

Campeau, E., Gobeil, S. (2011).
RNA interference in mammals: behind the screen.
Briefings in Functional Genomics

Kümmel, A., Selzer, P., Beibel, M., Gubler, H., Parker, C. N., Gabriel, D. (2011).
Comparison of multivariate data analysis strategies for high-content screening.
Journal of Biomolecular Screening

Laurell, E., Beck, K., Krupina, K., Theerthagiri, G., Bodenmiller, B., Horvath, P., Abersold, R., Antonin, W., Kutay, U. (2011)
Phosphorylation of Nup98 by multiple kinases is crucial for NPC disassembly during mitotic entry.
Cell

Yamauchi, Y., Boukari, H., Banerjee, I., Sbalzarini, I., F., Horvath, P., Helenius, A. (2011)
Histone deacetylase 8 is required for centrosome cohesion and influenza A virus entry.
PLoS Pathogens

Wild, T., Horvath, P., Wyler, E., Widmann, B., Badertscher, L., Zemp, I., Kozak, K., Csucs, G., Lund, E., Kutay, U. (2010)
A protein inventory of human ribosome biogenesis reveals an essential function of Exportin 5 in 60S subunit export.
PLoS Biology